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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 267

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 935 183

  3. aisdk aisdk Public

    🤖 A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    Rust 33 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 141 repositories
  • DOSE Public

    😷 Disease Ontology Semantic and Enrichment analysis

    YuLab-SMU/DOSE's past year of commit activity
    R 125 34 16 0 Updated Sep 26, 2026
  • biomedical-knowledge-mining-book Public

    📖 Biomedical knowledge mining using GOSemSim and clusterProfiler

    YuLab-SMU/biomedical-knowledge-mining-book's past year of commit activity
    TeX 96 30 0 0 Updated Sep 26, 2026
  • gson Public

    Base Class and Methods for 'gson' Format

    YuLab-SMU/gson's past year of commit activity
    R 3 4 0 0 Updated Sep 26, 2026
  • enrichplot Public

    Visualization of Functional Enrichment Result

    YuLab-SMU/enrichplot's past year of commit activity
    R 260 75 67 0 Updated Sep 26, 2026
  • GOSemSim Public

    ⛳ GO-terms Semantic Similarity Measures

    YuLab-SMU/GOSemSim's past year of commit activity
    R 74 24 4 0 Updated Sep 26, 2026
  • meshes Public

    🩺 MeSH Enrichment and Semantic analyses

    YuLab-SMU/meshes's past year of commit activity
    R 13 4 0 0 Updated Sep 26, 2026
  • MicrobiomeProfiler Public

    🦠 A shiny package for microbiome functional enrichment analysis

    YuLab-SMU/MicrobiomeProfiler's past year of commit activity
    R 42 8 0 0 Updated Sep 26, 2026
  • ReactomePA Public

    Reactome Pathway Analysis

    YuLab-SMU/ReactomePA's past year of commit activity
    R 46 10 16 0 Updated Sep 26, 2026
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler's past year of commit activity
    R 1,238 267 287 0 Updated Sep 26, 2026
  • enrichit Public

    C++ Implementations of Functional Enrichment Analysis

    YuLab-SMU/enrichit's past year of commit activity
    R 4 4 0 0 Updated Sep 26, 2026